PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G220200.1
Common NamePOPTR_0003s21090g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 262aa    MW: 28946.3 Da    PI: 8.2748
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G220200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.72.8e-183382255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++ GVr+++ +g+WvAeI+d +   ++ r +lg+f taeeAa+a+++a+  l+g
  Potri.003G220200.1 33 KFVGVRQRP-SGKWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 82
                        799******.7*********32...35**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.0E-133382IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-283390IPR001471AP2/ERF domain
SMARTSM003801.5E-373396IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-203391IPR016177DNA-binding domain
PROSITE profilePS5103219.7173390IPR001471AP2/ERF domain
CDDcd000181.62E-323392No hitNo description
PRINTSPR003674.3E-83445IPR001471AP2/ERF domain
PRINTSPR003674.3E-85672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MEYHQFQKQP EGVSPSKPSK FKERCLSNNS KNKFVGVRQR PSGKWVAEIK DTTQKIRMWL  60
GTFETAEEAA RAYDEAACLL RGSNTRTNFN THVSSNSPIS TKIRNLLNRK RSLKQNSSTT  120
PPAKSTIRAS TIVSTTSAFN SSVDGFPSSI ASHASYFNGI KQENQMFDNA YRPDLSGCFG  180
GLEPVTSQFH PSCSFPSGDV GLLSDASSCV ELAVFERMKV ERQISASLYD MNGVNEYFEN  240
SNDSSEALWD LPTLCQLFCP S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-153495668ATERF1
3gcc_A6e-153495668ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002304856.10.0hypothetical protein POPTR_0003s21090g
SwissprotQ6J9S12e-58RA211_ARATH; Ethylene-responsive transcription factor RAP2-11
TrEMBLB9GY710.0B9GY71_POPTR; Uncharacterized protein
STRINGPOPTR_0003s21090.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33413069
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-47related to AP2 11